PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005667-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 545aa    MW: 58954.2 Da    PI: 9.4485
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005667-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056789123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  NNU_005667-RA 67 FVCEICNKGFQRDQNLQLHRRGH 89
                   89*******************88 PP

2zf-C2H213.80.00017143165123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H +t+
  NNU_005667-RA 143 WKCEKCSKKYAVQSDWKAHTKTC 165
                    58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.94E-76689No hitNo description
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355110108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.94E-7138163No hitNo description
SMARTSM00355130143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQMMSGDGLS IPSSVRGFPQ EPISNPNPNP PNANPVVKKK RNLPGTPDPD AEVIALSPKT  60
LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTS KEIRKRVYIC PEKSCVHHDP  120
SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HTKTCGTREY KCDCGTLFSR  180
KDSFITHRAF CDALAEESAR LTSAAATNLN FRTDSINDAT STMPHGFGGR GGPNATAGIP  240
PLCPVFRPEF AGPEATNVLD ANRQKPRLSL WLDQANSHLN PIDAAANSNA FLATSSTGLP  300
ELVQMASTNM FSSSSSLVDY GGCVQPQWPS TGGNLSLSTS PRGLKEENGN KGQLVESLAP  360
LYSNNNQNQQ ANSAHMSATA LLQKAAQMGS TRSNPSLLGS FGVVSSSSSD TTSFNPHVQN  420
RNEFHQLMRQ AANQPENINE LMNSISTATA TTGVGDGMVG GLNLSSLTGT VNNLDRLMIP  480
QGGKQGQSVP VPQKFLSTAN EVEHSLTRDF LGVGGDAGRP FLQQELAKFA SMGSAMNLSQ  540
YSSTH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253625.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ700D21e-124IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A061GUF30.0A0A061GUF3_THECC; Nucleic acid binding protein, putative isoform 1
STRINGVIT_08s0040g02100.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-104C2H2-like zinc finger protein